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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56533140_56536066_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56533140 - 56536066
Intron Length:
2927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGTAT
5'SS Class:
major
3'SS Sequence:
TCTTGTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TTTTCTTGTATT
Flanking Amino Acid:
QMGRFISFLQELSCFVTRCY
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
69
38.3
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
84.1
0.77
0.8
81.4
34.9
Minor 5ss
36.4
-1.5
3.7
54.5
49.7
Minor BPS
62.7
0.48
1.8
84.45
36.2

Associated Gene:

Gene:
WASHC4
Ensembl Gene ID:
ENSAPLG00000015019
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015671
56502852 - 56543301
40450