Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56536135_56538712_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56536135 - 56538712

Intron Length:

2578

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTTTTCAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

ATTTGATGAATA

Flanking Amino Acid:

YNGLLFYGEGGTDSSMVEGD

Intron Amino Acid Position:

123

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.8

1.08

0.7

85.3

32.2

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

80.1

0.68

79.2

38.4

Minor 5ss

36.1

-1.6

2.7

45.8

42.3

Minor BPS

49.1

-0

2.1

68.02

38.2

Associated Gene:

Gene:

WASHC4

Ensembl Gene ID:

ENSAPLG00000015019

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015671

56502852 - 56543301

40450