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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56540185_56543240_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56540185 - 56543240
Intron Length:
3056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
TATGAATTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TATTCTGTAAAA
Flanking Amino Acid:
EFGRRDDGSQKIHAEVELKN
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1
60.3
39.3
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
70.8
0.47
1
66.5
43.6
Minor 5ss
28.9
-2.4
3.1
31
36.6
Minor BPS
57.8
0.24
2.1
73.69
37.9

Associated Gene:

Gene:
WASHC4
Ensembl Gene ID:
ENSAPLG00000015019
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015671
56502852 - 56543301
40450