About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56558277_56558353_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56558277 - 56558353
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGCCTA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTGTACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTAAA
U12 Branch Point Sequence:
TGTCCTTCCATT
Flanking Amino Acid:
FLSFPDGELKFIPMDVIDCP
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.9
76
39.5
Major BPS
61.3
0.28
1.1
61.7
34.1
Major PPT
71.2
0.48
1
65.3
39.7
Minor 5ss
31.1
-2.2
4.1
47
48.3
Minor BPS
48.4
-0
1.9
70.3
41

Associated Gene:

Gene:
ALDH1L2
Ensembl Gene ID:
ENSAPLG00000008126
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037656
56555754 - 56581875
26122