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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56565374_56565733_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56565374 - 56565733
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTCATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TATCCCCTCATT
Flanking Amino Acid:
LVIFGNDGKMVLVRNLQFED
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
82.7
0.74
0.8
79.8
31.8
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
51
0.11
2.1
75.63
40.9

Associated Gene:

Gene:
ALDH1L2
Ensembl Gene ID:
ENSAPLG00000008126
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037656
56555754 - 56581875
26122
ENSAPLT00000008505
56549836 - 56581875
32040