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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56567345_56567481_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56567345 - 56567481
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTAAATCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
KSGASSMHVVRMLEEIKQKY
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.7
0.65
0.9
74.8
39.7
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
ALDH1L2
Ensembl Gene ID:
ENSAPLG00000008126
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037656
56555754 - 56581875
26122
ENSAPLT00000008505
56549836 - 56581875
32040