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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56568472_56569604_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56568472 - 56569604
Intron Length:
1133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TACTTTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
TACTTTTTGACA
Flanking Amino Acid:
YDTINPTDGSIIASVSSASF
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
81.1
32.8
Major BPS
61.1
0.28
1
67
29.8
Major PPT
78.6
0.64
1
75.8
37.9
Minor 5ss
39.6
-1.2
2.9
57
41.2
Minor BPS
67
0.53
1.2
70.1
36.3

Associated Gene:

Gene:
ALDH1L2
Ensembl Gene ID:
ENSAPLG00000008126
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037656
56555754 - 56581875
26122
ENSAPLT00000008505
56549836 - 56581875
32040