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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56573973_56574349_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56573973 - 56574349
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGTTTCTACTT
Flanking Amino Acid:
GNTLVLKPAQVTPLTSLKFA
Intron Amino Acid Position:
622

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.8
0.56
0.9
74.4
35.5
Minor 5ss
34.9
-1.7
3.3
47.7
47.7
Minor BPS
49
0.01
1.9
71.27
40.8

Associated Gene:

Gene:
ALDH1L2
Ensembl Gene ID:
ENSAPLG00000008126
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037656
56555754 - 56581875
26122
ENSAPLT00000008505
56549836 - 56581875
32040