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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56584310_56585334_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56584310 - 56585334
Intron Length:
1025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAACACT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
GTTAACTCAGTT
Flanking Amino Acid:
DGATEKVIEMNVAVVELSGS
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
70.4
39.6
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
41.5
-0.9
3
55.5
43
Minor BPS
46.7
-0.1
1.9
67.39
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008125
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008427
56584127 - 56589387
5261