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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56598347_56601019_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56598347 - 56601019
Intron Length:
2673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTATT
5'SS Class:
major
3'SS Sequence:
ATCCTTTAAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TATCCTTTAAAT
Flanking Amino Acid:
SAGMVLDIVQHWDVFKNVTE
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.2
83
36.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
65.7
0.35
1
62.8
37
Minor 5ss
36.6
-1.5
3.1
51.4
45.2
Minor BPS
72.7
0.79
1.3
84.33
35.5

Associated Gene:

Gene:
SLC41A2
Ensembl Gene ID:
ENSAPLG00000008013
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008353
56597792 - 56645769
47978