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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56601128_56606911_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56601128 - 56606911
Intron Length:
5784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
GTAATTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TCTCCTGTAATT
Flanking Amino Acid:
MTLASRLSTAVNIGKMDSPI
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
74.7
35.4
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
69.3
0.43
1.1
64.8
45.4
Minor 5ss
38.9
-1.2
2.8
55.7
41.6
Minor BPS
57
0.3
2
76.64
40.8

Associated Gene:

Gene:
SLC41A2
Ensembl Gene ID:
ENSAPLG00000008013
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008353
56597792 - 56645769
47978