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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56606984_56607880_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56606984 - 56607880
Intron Length:
897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
ATCACTAAAAAA
Flanking Amino Acid:
LIIGNLALKQVQATVVGFLA
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
90.5
0.91
0.6
84.4
30.5
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
42.8
-0.5
1.9
52.49
39.3

Associated Gene:

Gene:
SLC41A2
Ensembl Gene ID:
ENSAPLG00000008013
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008353
56597792 - 56645769
47978