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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56610110_56620008_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
56610110 - 56620008
Intron Length:
9899

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTA|GCATGGATA
5'SS Class:
weak_major
3'SS Sequence:
GTATCTCCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TTTTTTTAGAGT
Flanking Amino Acid:
FGDLITLAILLVPFFLALTP
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.5
0.22
1.3
64.5
39.8
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
71.9
0.49
0.9
63.2
39.3
Minor 5ss
33.5
-1.9
4.2
49.2
42.6
Minor BPS
52.2
0.15
2
77.64
39.7

Associated Gene:

Gene:
SLC41A2
Ensembl Gene ID:
ENSAPLG00000008013
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008353
56597792 - 56645769
47978