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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56620131_56620711_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56620131 - 56620711
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTATTCTAAATA
Flanking Amino Acid:
EPVITAMVISSIGGLILDTT
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
60.5
0.33
1.6
68.34
38.3

Associated Gene:

Gene:
SLC41A2
Ensembl Gene ID:
ENSAPLG00000008013
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008353
56597792 - 56645769
47978