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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56620792_56632765_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56620792 - 56632765
Intron Length:
11974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
AATTTCCCACTT
Flanking Amino Acid:
GIVVYTPVINGIGGNLVAIQ
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.5
37.2
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
87.9
0.85
0.8
85.7
33.4
Minor 5ss
35.7
-1.6
3.2
45.3
43.7
Minor BPS
44.5
-0.3
2
64.2
40.3

Associated Gene:

Gene:
SLC41A2
Ensembl Gene ID:
ENSAPLG00000008013
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008353
56597792 - 56645769
47978