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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56662804_56755564_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56662804 - 56755564
Intron Length:
92761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
ACCTGCTTGACT
Flanking Amino Acid:
PLQELYNPTQLSNTAILHQI
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.7
84.8
25.1
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
88.8
0.87
0.6
84
23.9
Minor 5ss
31.8
-2.1
3.3
42.9
44.7
Minor BPS
60.1
0.4
1.8
72.97
44.3

Associated Gene:

Gene:
CHST11
Ensembl Gene ID:
ENSAPLG00000007984
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008277
56661955 - 56828065
166111