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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5667088_5669859_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5667088 - 5669859
Intron Length:
2772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAACATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTTTTTTTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
73.4
0.53
0.9
73.4
36
Minor 5ss
42.2
-0.9
2.5
54.4
42.8
Minor BPS
79.3
0.92
1.1
82.25
33.1

Associated Gene:

Gene:
PROSER2
Ensembl Gene ID:
ENSAPLG00000027360
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019209
5666937 - 5686150
19214