Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5672137_5683060_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5672137 - 5683060

Intron Length:

10924

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TTCCCCCACGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTAAT

U12 Branch Point Sequence:

AGAGCATTAATC

Flanking Amino Acid:

NQARCKNLAMDDESMKYLTH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.7

0.91

0.8

80.6

31.8

Major BPS

79.4

0.73

0.9

79.6

29.1

Major PPT

66.9

0.38

0.8

62.5

27.3

Minor 5ss

35.5

-1.6

3.3

47.5

42.3

Minor BPS

52.7

0.07

1.7

59.85

Associated Gene:

Gene:

PROSER2

Ensembl Gene ID:

ENSAPLG00000027360

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042434

5666937 - 5686150

19214

ENSAPLT00000019209

5666937 - 5686150

19214