About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56755651_56827947_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56755651 - 56827947
Intron Length:
72297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGCTC
5'SS Class:
major
3'SS Sequence:
TTTCCCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTAATTTCAATT
Flanking Amino Acid:
IFYFQSTLHPVMRRNPFGMD
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
68
43.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
86.8
0.83
0.7
81.2
23.8
Minor 5ss
34.2
-1.8
3.6
50.1
46.4
Minor BPS
56.9
0.29
1.5
73.29
37.9

Associated Gene:

Gene:
CHST11
Ensembl Gene ID:
ENSAPLG00000007984
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008277
56661955 - 56828065
166111