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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56887621_56889385_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56887621 - 56889385
Intron Length:
1765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCTCTAACT
Flanking Amino Acid:
IPGDKEYCISSDDLFSLPYC
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.5
0.84
0.7
79.8
32.2
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
79
0.99
1.5
96.75
28

Associated Gene:

Gene:
TXNRD1
Ensembl Gene ID:
ENSAPLG00000007200
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018233
56872257 - 56908501
36245
ENSAPLT00000007525
56872257 - 56896692
24436