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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56916984_56926285_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56916984 - 56926285
Intron Length:
9302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTGCC
5'SS Class:
major
3'SS Sequence:
CTTCTGGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
CATACCTGAAAG
Flanking Amino Acid:
RREPTRAALEMDGDSSTTDA
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
67
36.7
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
75.3
0.57
0.9
72.8
37.5
Minor 5ss
36.4
-1.5
2.9
45.4
42.7
Minor BPS
51.1
-0.1
1.7
56.07
44.3

Associated Gene:

Gene:
NFYB
Ensembl Gene ID:
ENSAPLG00000007166
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007448
56916666 - 56934704
18039