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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56926380_56926879_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56926380 - 56926879
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATCAA
U12 Branch Point Sequence:
CTTTTCTTCATT
Flanking Amino Acid:
GSHYVIQPHDDTEDSMNDHE
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
66.7
0.42
1.1
69.7
35.6
Major PPT
81.5
0.71
0.8
82.9
27.3
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
66.5
0.6
1.7
82.74
39.5

Associated Gene:

Gene:
NFYB
Ensembl Gene ID:
ENSAPLG00000007166
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007448
56916666 - 56934704
18039