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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56927011_56928883_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56927011 - 56928883
Intron Length:
1873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTCC
5'SS Class:
major
3'SS Sequence:
TTTTTCTCCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
GATGAATCAATT
Flanking Amino Acid:
MKNAIPQTGKIAKDAKECVQ
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.4
36
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
83.8
0.76
0.7
78
30.8
Minor 5ss
38.1
-1.3
3.2
51.4
45.3
Minor BPS
44.1
-0.3
2
60.85
42.3

Associated Gene:

Gene:
NFYB
Ensembl Gene ID:
ENSAPLG00000007166
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007448
56916666 - 56934704
18039