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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56931129_56933974_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56931129 - 56933974
Intron Length:
2846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTCTCTTTAAAT
Flanking Amino Acid:
LSEELTEEAFTNQLPAGLIT
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
82.5
29.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
87
0.83
0.7
84.6
30.3
Minor 5ss
39.3
-1.2
2.9
53
39
Minor BPS
71.5
0.75
1.4
80.63
41.5

Associated Gene:

Gene:
NFYB
Ensembl Gene ID:
ENSAPLG00000007166
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007448
56916666 - 56934704
18039