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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56934055_56934261_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56934055 - 56934261
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
TCTCTTTCCGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
TTACACTGAACG
Flanking Amino Acid:
VMVYTTSYQQISGVQQIQFS
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.1
38
Major BPS
62
0.3
1
53
34.1
Major PPT
80
0.68
0.7
76.8
25.2
Minor 5ss
36.7
-1.5
3.6
55.1
49.1
Minor BPS
56
0.05
1.8
64.52
42.2

Associated Gene:

Gene:
NFYB
Ensembl Gene ID:
ENSAPLG00000007166
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007448
56916666 - 56934704
18039