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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5694627_5701626_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5694627 - 5701626
Intron Length:
7000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCTTACTGAACC
Flanking Amino Acid:
NADLIFKTGGRRR*
Intron Amino Acid Position:
1297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
67.8
39.3
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
86
0.81
0.6
80.7
31.3
Minor 5ss
29.9
-2.3
3.3
38.1
46.8
Minor BPS
66.9
0.51
1.7
76.54
39.2

Associated Gene:

Gene:
UPF2
Ensembl Gene ID:
ENSAPLG00000010287
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020497
5694207 - 5750136
55930
ENSAPLT00000019447
5694207 - 5754202
59996
ENSAPLT00000010758
5694207 - 5751719
57513
ENSAPLT00000039255
5694207 - 5750136
55930