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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56947920_56948821_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56947920 - 56948821
Intron Length:
902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATCAT
U12 Branch Point Sequence:
GTTAGCTGAATA
Flanking Amino Acid:
GAPSTVKITKSVDCIHLSWE
Intron Amino Acid Position:
705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
70.5
0.51
1.3
74
41.2
Major PPT
90
0.9
0.6
88.5
21
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
51.1
0.03
1.9
65.99
40.3

Associated Gene:

Gene:
HCFC2
Ensembl Gene ID:
ENSAPLG00000007046
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007322
56946745 - 56964425
17681