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Intron Name: Anas_platyrhynchos_platyrhynchos_1_56949008_56950983_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56949008 - 56950983

Intron Length:

1976

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGCTGCT

5'SS Class:

major

3'SS Sequence:

GCTTTATTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

ATTGCTTTATTT

Flanking Amino Acid:

PEETLSNSNKLENANVPDYR

Intron Amino Acid Position:

643

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

1.2

69.8

39.5

Major BPS

90.4

0.7

90.2

19.3

Major PPT

84.1

0.77

0.8

81.1

35.5

Minor 5ss

39.5

-1.2

3.5

45.7

Minor BPS

61.2

0.43

1.7

77.64

39.7

Associated Gene:

Gene:

HCFC2

Ensembl Gene ID:

ENSAPLG00000007046

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007322

56946745 - 56964425

17681