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Intron Name: Anas_platyrhynchos_platyrhynchos_1_56951122_56952346_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56951122 - 56952346

Intron Length:

1225

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTAAGTCTG

5'SS Class:

major

3'SS Sequence:

CTTCAAATACTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCAAAT

U12 Branch Point Sequence:

TGTTCTTCAAAT

Flanking Amino Acid:

TGQTNDSHSSKTPQRQMAPV

Intron Amino Acid Position:

597

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.5

0.56

1.1

45.2

Major BPS

77.3

0.68

81.5

Major PPT

61.2

0.25

53.2

40.2

Minor 5ss

40.7

-1

3.1

60.3

43.9

Minor BPS

0.58

1.6

82.62

38.2

Associated Gene:

Gene:

HCFC2

Ensembl Gene ID:

ENSAPLG00000007046

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007322

56946745 - 56964425

17681