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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56956661_56957918_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56956661 - 56957918
Intron Length:
1258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTGTATTTTATT
Flanking Amino Acid:
CCKDLWYLDTEKPPAPSQVQ
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
66.7
40.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.6
0.64
0.9
73.9
36.8
Minor 5ss
28.3
-2.5
2.7
29
37.1
Minor BPS
49.7
0.06
1.8
67.99
43.4

Associated Gene:

Gene:
HCFC2
Ensembl Gene ID:
ENSAPLG00000007046
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007322
56946745 - 56964425
17681