About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56958108_56958685_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56958108 - 56958685
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTCAGTGTT
5'SS Class:
major
3'SS Sequence:
TTTCATTTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATTTACT
Flanking Amino Acid:
CTGSFCYLNLDTTEWIGLIS
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.3
76.2
39.9
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
76.2
0.59
0.9
70.8
39.5
Minor 5ss
33.6
-1.9
3.3
41.8
44.7
Minor BPS
66.5
0.6
1.9
86.74
38.3

Associated Gene:

Gene:
HCFC2
Ensembl Gene ID:
ENSAPLG00000007046
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007322
56946745 - 56964425
17681