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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56958790_56959806_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56958790 - 56959806
Intron Length:
1017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTCTG
5'SS Class:
major
3'SS Sequence:
TCCTATATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TTTTCCTATATT
Flanking Amino Acid:
SLHTANVIGNKMYVFGGWVP
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
68.1
42.8
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
80.2
0.68
0.9
77.3
35.3
Minor 5ss
45.6
-0.5
2.8
58.7
40.1
Minor BPS
65.6
0.57
2
87.87
37.8

Associated Gene:

Gene:
HCFC2
Ensembl Gene ID:
ENSAPLG00000007046
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007322
56946745 - 56964425
17681