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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56959892_56960375_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56959892 - 56960375
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTGAT
U12 Branch Point Sequence:
AATAAGTTGATT
Flanking Amino Acid:
RLNDLWELDIETMTWSRPET
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
72.4
0.56
1.1
63.1
44.4
Major PPT
89.4
0.89
0.6
88.9
20.3
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
45.2
-0.2
2.2
63.93
40.3

Associated Gene:

Gene:
HCFC2
Ensembl Gene ID:
ENSAPLG00000007046
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007322
56946745 - 56964425
17681