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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56960585_56961609_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
56960585 - 56961609
Intron Length:
1025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTAT
5'SS Class:
strong_major
3'SS Sequence:
AATAATACCCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATACTG
Flanking Amino Acid:
ESEDSNNNVPRYLNDFYELE
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
34.9
Major BPS
100
1.24
0.5
100
0
Major PPT
55.9
0.13
1
45.4
41.2
Minor 5ss
55.7
0.19
2.5
72.7
44.5
Minor BPS
53.7
-0
1.9
67.5
40.7

Associated Gene:

Gene:
HCFC2
Ensembl Gene ID:
ENSAPLG00000007046
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007322
56946745 - 56964425
17681