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Intron Name: Anas_platyrhynchos_platyrhynchos_1_56962301_56963899_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56962301 - 56963899

Intron Length:

1599

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGCGGGGC

5'SS Class:

major

3'SS Sequence:

TTTTTACTTGTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTTTACTT

Flanking Amino Acid:

IADELHVYNTATNQWFLPAV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.3

0.34

1.1

51.1

39.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

86.6

0.82

0.7

82.4

28.2

Minor 5ss

22.6

-3.2

3.4

37.7

Minor BPS

70.1

0.71

1.5

86.64

33.8

Associated Gene:

Gene:

HCFC2

Ensembl Gene ID:

ENSAPLG00000007046

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007322

56946745 - 56964425

17681