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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56967714_56969092_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56967714 - 56969092
Intron Length:
1379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
TGATTGTTAACA
Flanking Amino Acid:
MALLKKINQILLLLLV
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
74.4
35.9
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
92.1
0.95
0.6
91.2
20.4
Minor 5ss
34.5
-1.8
3
40.9
39.3
Minor BPS
60.7
0.33
2.1
72.6
39.2

Associated Gene:

Gene:
GLT8D2
Ensembl Gene ID:
ENSAPLG00000006875
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007155
56967669 - 56978947
11279