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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56969189_56970372_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56969189 - 56970372
Intron Length:
1184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TAATGCATAATT
Flanking Amino Acid:
KVPSALKNEAVDLESPEEME
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.2
29.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
89.3
0.88
0.7
84.9
29.9
Minor 5ss
32.3
-2
3.3
42.9
44.7
Minor BPS
54.4
0.22
2
75.22
41.3

Associated Gene:

Gene:
GLT8D2
Ensembl Gene ID:
ENSAPLG00000006875
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007155
56967669 - 56978947
11279