Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56970542_56972307_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56970542 - 56972307

Intron Length:

1766

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTATATGAG

5'SS Class:

major

3'SS Sequence:

CTTTTAATCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CTTCTTTTAATC

Flanking Amino Acid:

VGLKNTIPHIRKWIENSKLK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.43

1.1

58.6

40.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

79.4

0.66

0.8

73.5

34.7

Minor 5ss

-1.4

3.2

48.3

47.8

Minor BPS

67.2

0.52

1.2

70.66

35.2

Associated Gene:

Gene:

GLT8D2

Ensembl Gene ID:

ENSAPLG00000006875

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007155

56967669 - 56978947

11279