Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56972426_56972982_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56972426 - 56972982

Intron Length:

557

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTGAGTAAA

5'SS Class:

major

3'SS Sequence:

CCCTGTTTAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAC

U12 Branch Point Sequence:

CCCTGTTTAACA

Flanking Amino Acid:

DAARPELLQPLNFVRFYLPL

Intron Amino Acid Position:

135

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

1.1

72.6

33.5

Major BPS

77.3

0.68

79.3

29.4

Major PPT

72.8

0.51

0.9

36.4

Minor 5ss

32.5

-2

2.8

43.1

43.9

Minor BPS

56.2

0.19

1.8

61.93

45.1

Associated Gene:

Gene:

GLT8D2

Ensembl Gene ID:

ENSAPLG00000006875

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007155

56967669 - 56978947

11279