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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56975500_56976207_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56975500 - 56976207
Intron Length:
708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTAACTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTTTTTTTAACT
Flanking Amino Acid:
HEMVRSVGMQNTYMGFLDYR
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
78.3
0.64
0.9
69.6
41.1
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
81.9
1.08
1
90.89
33.1

Associated Gene:

Gene:
GLT8D2
Ensembl Gene ID:
ENSAPLG00000006875
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007155
56967669 - 56978947
11279