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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56983145_56983228_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56983145 - 56983228
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGAATC
5'SS Class:
major
3'SS Sequence:
TTCTCATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTGTCTACT
Flanking Amino Acid:
KPRIAAFNGKCIYEIFSREV
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
77.1
31.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82.9
0.74
0.7
81.5
29.2
Minor 5ss
35
-1.7
3.1
48.5
40.6
Minor BPS
48.3
-0
2.5
79.84
42.1

Associated Gene:

Gene:
TDG
Ensembl Gene ID:
ENSAPLG00000006522
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018316
56982086 - 56988544
6459
ENSAPLT00000006819
56982387 - 56988743
6357
ENSAPLT00000025391
56982387 - 56993178
10792