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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56983312_56983397_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56983312 - 56983397
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCT
Flanking Amino Acid:
RTTPGSKDLSSKEFREGGRI
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
77.8
33.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.1
0.81
0.6
85.1
22.4
Minor 5ss
40.1
-1.1
3.4
55.5
48.7
Minor BPS
74.5
0.85
1.5
91.05
32.7

Associated Gene:

Gene:
TDG
Ensembl Gene ID:
ENSAPLG00000006522
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025391
56982387 - 56993178
10792
ENSAPLT00000018316
56982086 - 56988544
6459
ENSAPLT00000006819
56982387 - 56988743
6357