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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56983534_56984956_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
56983534 - 56984956
Intron Length:
1423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
TCCTACTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTTAAAG
Flanking Amino Acid:
HHYPGPGNHFWKCLFMSGLS
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
75.2
34.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.7
0.65
0.8
76.2
32
Minor 5ss
66.8
0.57
2.2
81.2
32.3
Minor BPS
65.9
0.36
1.4
67.73
40.3

Associated Gene:

Gene:
TDG
Ensembl Gene ID:
ENSAPLG00000006522
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025391
56982387 - 56993178
10792
ENSAPLT00000018316
56982086 - 56988544
6459
ENSAPLT00000006819
56982387 - 56988743
6357