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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56985027_56985532_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56985027 - 56985532
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TCTTGCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TAATCGTTAAAA
Flanking Amino Acid:
ILTFDLDIVIIGINPGLMAA
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
71.7
38.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
81.9
0.72
0.8
77
31.6
Minor 5ss
37.9
-1.4
2.7
47.5
36
Minor BPS
57.9
0.24
2.1
71.13
40.3

Associated Gene:

Gene:
TDG
Ensembl Gene ID:
ENSAPLG00000006522
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006819
56982387 - 56988743
6357
ENSAPLT00000025391
56982387 - 56993178
10792
ENSAPLT00000018316
56982086 - 56988544
6459