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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56994383_56997135_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56994383 - 56997135
Intron Length:
2753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TTATTCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TATTCCTTACAG
Flanking Amino Acid:
ADAEDSETQKTLNHLLLCSM
Intron Amino Acid Position:
787

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
27.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86.6
0.82
0.8
80.9
31
Minor 5ss
40.6
-1.1
3.1
57.4
46.8
Minor BPS
63.9
0.3
1.8
70.09
42.7

Associated Gene:

Gene:
HSP90B1
Ensembl Gene ID:
ENSAPLG00000014678
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042395
56993290 - 57005470
12181