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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56996269_56997135_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56996269 - 56997135
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTGTCTCCACA
Flanking Amino Acid:
ADAEDSETQKESTDVKDEL*
Intron Amino Acid Position:
787

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
27.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
82
0.72
0.8
76.7
32.1
Minor 5ss
40.6
-1.1
3.1
57.4
46.8
Minor BPS
50.3
0
2.1
70.77
41.8

Associated Gene:

Gene:
HSP90B1
Ensembl Gene ID:
ENSAPLG00000014678
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015327
56996013 - 57005470
9458