Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_56997959_56998053_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56997959 - 56998053

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATAAG

5'SS Class:

strong_major

3'SS Sequence:

GCTTCCATATTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATTAA

U12 Branch Point Sequence:

GCTTCCATATTA

Flanking Amino Acid:

LIKDMLRRVKENEDDKTVSD

Intron Amino Acid Position:

702

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

80.3

34.3

Major BPS

67.7

0.44

58.3

38.4

Major PPT

65.8

0.36

0.9

64.1

36.6

Minor 5ss

34.4

-1.8

2.8

41.5

45.1

Minor BPS

0.06

1.9

64.94

41.7

Associated Gene:

Gene:

HSP90B1

Ensembl Gene ID:

ENSAPLG00000014678

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042395

56993290 - 57005470

12181

ENSAPLT00000015327

56996013 - 57005470

9458