Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57002697_57003569_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57002697 - 57003569

Intron Length:

873

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TATTTTCTTCTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTTAC

U12 Branch Point Sequence:

ACACTCTTACTC

Flanking Amino Acid:

GNTLGRGTTITLVLKEEASD

Intron Amino Acid Position:

248

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

1.2

90.9

28.7

Major BPS

69.2

0.48

37.1

Major PPT

0.79

0.7

78.1

Minor 5ss

-0.8

2.9

59.7

Minor BPS

49.2

-0

1.6

54.27

Associated Gene:

Gene:

HSP90B1

Ensembl Gene ID:

ENSAPLG00000014678

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015327

56996013 - 57005470

9458

ENSAPLT00000042395

56993290 - 57005470

12181