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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5705500_5710148_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5705500 - 5710148
Intron Length:
4649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTATTTTCACT
Flanking Amino Acid:
MLTRKGNKQQFKILNVPMSS
Intron Amino Acid Position:
1210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.5
0.84
0.7
82
28.7
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
63.2
0.5
1.8
83.78
37.4

Associated Gene:

Gene:
UPF2
Ensembl Gene ID:
ENSAPLG00000010287
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010758
5694207 - 5751719
57513
ENSAPLT00000039255
5694207 - 5750136
55930
ENSAPLT00000020497
5694207 - 5750136
55930
ENSAPLT00000019447
5694207 - 5754202
59996