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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57062024_57065594_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57062024 - 57065594
Intron Length:
3571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TACTTTTGAACT
Flanking Amino Acid:
FHYIQLGTVYRGLSVVPDEE
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
83.2
30.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
85.2
0.79
0.9
76.9
42.1
Minor 5ss
33.6
-1.9
3
41.3
45.3
Minor BPS
65.2
0.56
1.4
77.34
39.2

Associated Gene:

Gene:
NT5DC3
Ensembl Gene ID:
ENSAPLG00000013737
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014345
57051942 - 57085081
33140
ENSAPLT00000045326
57051942 - 57078306
26365
ENSAPLT00000033022
57051942 - 57090863
38922